recipe bioconductor-methylaiddata

MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/MethylAidData.html

License:

GPL (>= 2)

Recipe:

/bioconductor-methylaiddata/meta.yaml

A data package containing summarized Illumina 450k array data on 2800 samples and summarized EPIC data for 2620 samples. The data can be use as a background data set in the interactive application.

package bioconductor-methylaiddata

(downloads) docker_bioconductor-methylaiddata

versions:
1.34.0-0,  1.32.0-0,  1.30.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0, 

1.34.0-0,  1.32.0-0,  1.30.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-methylaid:

>=1.36.0,<1.37.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-methylaiddata

and update with::

   mamba update bioconductor-methylaiddata

To create a new environment, run:

mamba create --name myenvname bioconductor-methylaiddata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-methylaiddata:<tag>

(see `bioconductor-methylaiddata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylaiddata/README.html)