recipe bioconductor-methylclockdata

Data for methylclock package

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/methylclockData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-methylclockdata/meta.yaml

Collection of 9 datasets, andrews and bakulski cord blood, blood gse35069, blood gse35069 chen, blood gse35069 complete, combined cord blood, cord bloo d gse68456, gervin and lyle cord blood, guintivano dlpfc and saliva gse48472". Data downloaded from [meffil](https://github.com/perishky/meffil/). Data used to estimate cell counts using Extrinsic epigenetic age acceleration (EEAA) method Collection of 12 datasets to use with MethylClock package to estimate chronological and gestational DNA methylationwith estimators to use wit different methylation clocks

package bioconductor-methylclockdata

Versions:

1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221109

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-experimenthubdata >=1.24.0,<1.25.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-methylclock

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methylclockdata

and update with:

conda update bioconductor-methylclockdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylclockdata:<tag>

(see bioconductor-methylclockdata/tags for valid values for <tag>)

Download stats

Link to this page

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