recipe bioconductor-methylscaper

Visualization of Methylation Data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/methylscaper.html

License

GPL-2

Recipe

/bioconductor-methylscaper/meta.yaml

methylscaper is an R package for processing and visualizing data jointly profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe, etc.). The package supports both single-cell and single-molecule data, and a common interface for jointly visualizing both data types through the generation of ordered representational methylation-state matrices. The Shiny app allows for an interactive seriation process of refinement and re-weighting that optimally orders the cells or DNA molecules to discover methylation patterns and nucleosome positioning.

package bioconductor-methylscaper

(downloads) docker_bioconductor-methylscaper

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylscaper

and update with:

conda update bioconductor-methylscaper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylscaper:<tag>

(see bioconductor-methylscaper/tags for valid values for <tag>)