recipe bioconductor-methylumi

This package provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An “intelligent” import function, methylumiR can read the Illumina text files and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files from HumanMethylation27 and HumanMethylation450 microarrays. Normalization, background correction, and quality control features for GoldenGate, Infinium, and Infinium HD arrays are also included.







biotools: methylumi, doi: 10.1186/1471-2164-14-293

package bioconductor-methylumi

(downloads) docker_bioconductor-methylumi


2.28.0-0, 2.26.0-0, 2.24.1-0, 2.22.0-1, 2.22.0-0

Depends bioconductor-annotate


Depends bioconductor-annotationdbi


Depends bioconductor-biobase


Depends bioconductor-biocgenerics


Depends bioconductor-fdb.infiniummethylation.hg19


Depends bioconductor-genefilter


Depends bioconductor-genomeinfodb


Depends bioconductor-genomicranges


Depends bioconductor-illuminaio


Depends bioconductor-iranges


Depends bioconductor-minfi


Depends bioconductor-s4vectors


Depends bioconductor-summarizedexperiment


Depends r-base


Depends r-ggplot2

Depends r-lattice

Depends r-matrixstats

Depends r-reshape2

Depends r-scales



With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylumi

and update with:

conda update bioconductor-methylumi

or use the docker container:

docker pull<tag>

(see bioconductor-methylumi/tags for valid values for <tag>)