bioconductor-methylumi

downloads

This package provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An “intelligent” import function, methylumiR can read the Illumina text files and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files from HumanMethylation27 and HumanMethylation450 microarrays. Normalization, background correction, and quality control features for GoldenGate, Infinium, and Infinium HD arrays are also included.

Home http://bioconductor.org/packages/3.6/bioc/html/methylumi.html
Versions 2.22.0, 2.24.1
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-methylumi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylumi

and update with:

conda update bioconductor-methylumi

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-methylumi.