- recipe bioconductor-methylumi
Handle Illumina methylation data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/methylumi.html
- License
GPL-2
- Recipe
- Links
biotools: methylumi, doi: 10.1186/1471-2164-14-293
This package provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An "intelligent" import function, methylumiR can read the Illumina text files and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files from HumanMethylation27 and HumanMethylation450 microarrays. Normalization, background correction, and quality control features for GoldenGate, Infinium, and Infinium HD arrays are also included.
- package bioconductor-methylumi¶
-
- Versions
2.40.1-0
,2.38.0-0
,2.36.0-1
,2.36.0-0
,2.34.0-0
,2.32.0-0
,2.30.0-1
,2.28.0-0
,2.26.0-0
,2.40.1-0
,2.38.0-0
,2.36.0-1
,2.36.0-0
,2.34.0-0
,2.32.0-0
,2.30.0-1
,2.28.0-0
,2.26.0-0
,2.24.1-0
,2.22.0-1
,2.22.0-0
- Depends
bioconductor-annotate
>=1.72.0,<1.73.0
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-fdb.infiniummethylation.hg19
>=2.2.0,<2.3.0
bioconductor-genefilter
>=1.76.0,<1.77.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-illuminaio
>=0.36.0,<0.37.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-minfi
>=1.40.0,<1.41.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methylumi
and update with:
conda update bioconductor-methylumi
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylumi:<tag>
(see bioconductor-methylumi/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylumi/README.html)