recipe bioconductor-mgsa

Model-based gene set analysis

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/mgsa.html

License:

Artistic-2.0

Recipe:

/bioconductor-mgsa/meta.yaml

Links:

biotools: mgsa, doi: 10.1093/nar/gkq045

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

package bioconductor-mgsa

(downloads) docker_bioconductor-mgsa

versions:
1.54.0-0,  1.50.0-2,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-2,  1.46.0-1,  1.46.0-0,  1.42.0-2, 

1.54.0-0,  1.50.0-2,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-2,  1.46.0-1,  1.46.0-0,  1.42.0-2,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc:

>=13

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.4,<4.5.0a0

depends r-gplots:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mgsa

and update with::

   mamba update bioconductor-mgsa

To create a new environment, run:

mamba create --name myenvname bioconductor-mgsa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mgsa:<tag>

(see `bioconductor-mgsa/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mgsa/README.html)