recipe bioconductor-michip

MiChip Parsing and Summarizing Functions



GPL (>= 2)




biotools: michip, doi: 10.1038/nmeth.3252

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

package bioconductor-michip

(downloads) docker_bioconductor-michip



depends bioconductor-biobase:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-michip

and update with::

   mamba update bioconductor-michip

To create a new environment, run:

mamba create --name myenvname bioconductor-michip

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-michip/tags`_ for valid values for ``<tag>``)

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