recipe bioconductor-microbiomedatasets

Experiment Hub based microbiome datasets

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/microbiomeDataSets.html

License:

CC0

Recipe:

/bioconductor-microbiomedatasets/meta.yaml

microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.

package bioconductor-microbiomedatasets

Versions:

1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-treesummarizedexperiment >=2.6.0,<2.7.0

• curl

• r-ape

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-microbiomedatasets

and update with:

conda update bioconductor-microbiomedatasets

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-microbiomedatasets:<tag>

(see bioconductor-microbiomedatasets/tags for valid values for <tag>)

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