recipe bioconductor-mineica

The goal of MineICA is to perform Independent Component Analysis (ICA) on multiple transcriptome datasets, integrating additional data (e.g molecular, clinical and pathological). This Integrative ICA helps the biological interpretation of the components by studying their association with variables (e.g sample annotations) and gene sets, and enables the comparison of components from different datasets using correlation-based graph.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MineICA.html

License

GPL-2

Recipe

/bioconductor-mineica/meta.yaml

Links

biotools: mineica, doi: 10.1155/2014/213656

package bioconductor-mineica

(downloads) docker_bioconductor-mineica

Versions

1.22.0-0, 1.18.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-gostats

>=2.48.0,<2.49.0

Depends bioconductor-graph

>=1.60.0,<1.61.0

Depends bioconductor-lumi

>=2.34.0,<2.35.0

Depends bioconductor-lumihumanall.db

>=1.22.0,<1.23.0

Depends bioconductor-marray

>=1.60.0,<1.61.0

Depends bioconductor-rgraphviz

>=2.26.0,<2.27.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-colorspace

Depends r-fastica

Depends r-foreach

Depends r-fpc

Depends r-ggplot2

Depends r-gtools

Depends r-hmisc

Depends r-igraph

Depends r-jade

Depends r-mclust

Depends r-plyr

Depends r-rcolorbrewer

Depends r-scales

Depends r-xtable

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mineica

and update with:

conda update bioconductor-mineica

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mineica:<tag>

(see bioconductor-mineica/tags for valid values for <tag>)