recipe bioconductor-minimumdistance

A Package for De Novo CNV Detection in Case-Parent Trios

Homepage

https://bioconductor.org/packages/3.14/bioc/html/MinimumDistance.html

License

Artistic-2.0

Recipe

/bioconductor-minimumdistance/meta.yaml

Links

biotools: minimumdistance, doi: 10.1186/1471-2105-13-330

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.

package bioconductor-minimumdistance

Versions

1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-1,  1.26.0-0, 

1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-1,  1.26.0-0,  1.24.1-0,  1.22.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-dnacopy >=1.68.0,<1.69.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-matrixgenerics >=1.6.0,<1.7.0

• bioconductor-oligoclasses >=1.56.0,<1.57.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-vanillaice >=1.56.0,<1.57.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-ff

• r-foreach

• r-lattice

• r-matrixstats

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minimumdistance

and update with:

conda update bioconductor-minimumdistance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minimumdistance:<tag>

(see bioconductor-minimumdistance/tags for valid values for <tag>)

Download stats

Link to this page

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