recipe bioconductor-minimumdistance

A Package for De Novo CNV Detection in Case-Parent Trios

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MinimumDistance.html

License

Artistic-2.0

Recipe

/bioconductor-minimumdistance/meta.yaml

Links

biotools: minimumdistance, doi: 10.1186/1471-2105-13-330

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.

package bioconductor-minimumdistance

Versions

1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-1,  1.26.0-0,  1.24.1-0,  1.22.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-dnacopy >=1.62.0,<1.63.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-oligoclasses >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• bioconductor-vanillaice >=1.50.0,<1.51.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-ff

• r-foreach

• r-lattice

• r-matrixstats

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minimumdistance

and update with:

conda update bioconductor-minimumdistance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minimumdistance:<tag>

(see bioconductor-minimumdistance/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minimumdistance/README.html)