recipe bioconductor-minimumdistance

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MinimumDistance.html

License

Artistic-2.0

Recipe

/bioconductor-minimumdistance/meta.yaml

Links

biotools: minimumdistance, doi: 10.1186/1471-2105-13-330

package bioconductor-minimumdistance

Versions

1.26.0-1, 1.26.0-0, 1.24.1-0, 1.22.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-dnacopy >=1.56.0,<1.57.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-oligoclasses >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• bioconductor-vanillaice >=1.44.0,<1.45.0

• r-base >=3.5.1,<3.5.2.0a0

• r-data.table

• r-ff

• r-foreach

• r-lattice

• r-matrixstats

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minimumdistance

and update with:

conda update bioconductor-minimumdistance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minimumdistance:<tag>

(see bioconductor-minimumdistance/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minimumdistance/README.html)