recipe bioconductor-minimumdistance

A Package for De Novo CNV Detection in Case-Parent Trios

Homepage

https://bioconductor.org/packages/3.10/bioc/html/MinimumDistance.html

License

Artistic-2.0

Recipe

/bioconductor-minimumdistance/meta.yaml

Links

biotools: minimumdistance, doi: 10.1186/1471-2105-13-330

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.

package bioconductor-minimumdistance

Versions

1.30.0-0, 1.28.0-1, 1.26.0-1, 1.26.0-0, 1.24.1-0, 1.22.0-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-dnacopy >=1.60.0,<1.61.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-oligoclasses >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• bioconductor-vanillaice >=1.48.0,<1.49.0

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-ff

• r-foreach

• r-lattice

• r-matrixstats

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minimumdistance

and update with:

conda update bioconductor-minimumdistance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minimumdistance:<tag>

(see bioconductor-minimumdistance/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minimumdistance/README.html)