- recipe bioconductor-minimumdistance
A Package for De Novo CNV Detection in Case-Parent Trios
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/MinimumDistance.html
- License
Artistic-2.0
- Recipe
- Links
biotools: minimumdistance, doi: 10.1186/1471-2105-13-330
Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.
- package bioconductor-minimumdistance¶
-
- Versions
1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-1
,1.26.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-1
,1.26.0-0
,1.24.1-0
,1.22.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-dnacopy
>=1.68.0,<1.69.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-matrixgenerics
>=1.6.0,<1.7.0
bioconductor-oligoclasses
>=1.56.0,<1.57.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-vanillaice
>=1.56.0,<1.57.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-minimumdistance
and update with:
conda update bioconductor-minimumdistance
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-minimumdistance:<tag>
(see bioconductor-minimumdistance/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-minimumdistance/README.html)