recipe bioconductor-mirsponger

Identification and analysis of miRNA sponge interaction networks and modules

Homepage

https://bioconductor.org/packages/3.12/bioc/html/miRspongeR.html

License

GPL-3

Recipe

/bioconductor-mirsponger/meta.yaml

This package provides several functions to study miRNA sponge (also called ceRNA or miRNA decoy), including popular methods for identifying miRNA sponge interactions, and the integrative method to integrate miRNA sponge interactions from different methods, as well as the functions to validate miRNA sponge interactions, and infer miRNA sponge modules, conduct enrichment analysis of modules, and conduct survival analysis of modules.

package bioconductor-mirsponger

Versions

1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.1-0

Depends

• bioconductor-clusterprofiler >=3.18.0,<3.19.0

• bioconductor-dose >=3.16.0,<3.17.0

• bioconductor-org.hs.eg.db >=3.12.0,<3.13.0

• bioconductor-reactomepa >=1.34.0,<1.35.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=7.5.0

• r-base >=4.0,<4.1.0a0

• r-corpcor

• r-igraph

• r-linkcomm

• r-mcl

• r-rcpp

• r-survival

• r-varhandle

Required By

• bioconductor-mirsm

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mirsponger

and update with:

conda update bioconductor-mirsponger

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mirsponger:<tag>

(see bioconductor-mirsponger/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mirsponger/README.html)