-
recipe
bioconductor-mirsponger
Identification and analysis of miRNA sponge interaction networks and modules
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/miRspongeR.html
- License
GPL-3
- Recipe
This package provides several functions to study miRNA sponge (also called ceRNA or miRNA decoy), including popular methods for identifying miRNA sponge interactions, and the integrative method to integrate miRNA sponge interactions from different methods, as well as the functions to validate miRNA sponge interactions, and infer miRNA sponge modules, conduct enrichment analysis of modules, and conduct survival analysis of modules.
-
package
bioconductor-mirsponger
¶ -
- Versions
1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.1-0
- Depends
bioconductor-clusterprofiler
>=3.18.0,<3.19.0
bioconductor-dose
>=3.16.0,<3.17.0
bioconductor-org.hs.eg.db
>=3.12.0,<3.13.0
bioconductor-reactomepa
>=1.34.0,<1.35.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-mirsponger
and update with:
conda update bioconductor-mirsponger
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mirsponger:<tag>
(see bioconductor-mirsponger/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mirsponger/README.html)