recipe bioconductor-moanin

An R Package for Time Course RNASeq Data Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/moanin.html

License:

BSD 3-clause License + file LICENSE

Recipe:

/bioconductor-moanin/meta.yaml

Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.

package bioconductor-moanin

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-topgo >=2.50.0,<2.51.0

• r-base >=4.2,<4.3.0a0

• r-clusterr

• r-mass >=1.0.0

• r-matrixstats

• r-nmi

• r-reshape2

• r-viridis

• r-zoo

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-moanin

and update with:

conda update bioconductor-moanin

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-moanin:<tag>

(see bioconductor-moanin/tags for valid values for <tag>)

Download stats

Link to this page

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