recipe bioconductor-moanin

An R Package for Time Course RNASeq Data Analysis

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/moanin.html

License:

BSD 3-clause License + file LICENSE

Recipe:

/bioconductor-moanin/meta.yaml

Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.

package bioconductor-moanin

versions:

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-edger:

>=4.0.0,<4.1.0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends bioconductor-topgo:

>=2.54.0,<2.55.0

depends r-base:

>=4.3,<4.4.0a0

depends r-clusterr:

depends r-mass:

>=1.0.0

depends r-matrixstats:

depends r-nmi:

depends r-reshape2:

depends r-viridis:

depends r-zoo:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-moanin

and update with::

   mamba update bioconductor-moanin

To create a new environment, run:

mamba create --name myenvname bioconductor-moanin

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-moanin:<tag>

(see `bioconductor-moanin/tags`_ for valid values for ``<tag>``)

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Link to this page

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