recipe bioconductor-mobilitytransformr

Effective mobility scale transformation of CE-MS(/MS) data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/MobilityTransformR.html

License:

Artistic-2.0

Recipe:

/bioconductor-mobilitytransformr/meta.yaml

MobilityTransformR collects a tool set for effective mobility scale transformation of CE-MS/MS data in order to increase reproducibility. It provides functionality to determine the migration times from mobility markers that have been added to the analysis and performs the transformation based on these markers. MobilityTransformR supports the conversion of numeric vectors, Spectra-objects, and MSnOnDiskExp.

package bioconductor-mobilitytransformr

(downloads) docker_bioconductor-mobilitytransformr

versions:

1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-metabocoreutils:

>=1.10.0,<1.11.0

depends bioconductor-msnbase:

>=2.28.0,<2.29.0

depends bioconductor-spectra:

>=1.12.0,<1.13.0

depends bioconductor-xcms:

>=4.0.0,<4.1.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mobilitytransformr

and update with::

   mamba update bioconductor-mobilitytransformr

To create a new environment, run:

mamba create --name myenvname bioconductor-mobilitytransformr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mobilitytransformr:<tag>

(see `bioconductor-mobilitytransformr/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mobilitytransformr/README.html)