recipe bioconductor-modcon

Modifying splice site usage by changing the mRNP code, while maintaining the genetic code

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ModCon.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-modcon/meta.yaml

Collection of functions to calculate a nucleotide sequence surrounding for splice donors sites to either activate or repress donor usage. The proposed alternative nucleotide sequence encodes the same amino acid and could be applied e.g. in reporter systems to silence or activate cryptic splice donor sites.

package bioconductor-modcon

(downloads) docker_bioconductor-modcon

versions:

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl:

>=5.6.0

depends r-base:

>=4.3,<4.4.0a0

depends r-data.table:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-modcon

and update with::

   mamba update bioconductor-modcon

To create a new environment, run:

mamba create --name myenvname bioconductor-modcon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-modcon:<tag>

(see `bioconductor-modcon/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-modcon/README.html)