recipe bioconductor-mousegastrulationdata

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis






Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

package bioconductor-mousegastrulationdata

(downloads) docker_bioconductor-mousegastrulationdata



depends bioconductor-biocgenerics:


depends bioconductor-bumpymatrix:


depends bioconductor-data-packages:


depends bioconductor-experimenthub:


depends bioconductor-s4vectors:


depends bioconductor-singlecellexperiment:


depends bioconductor-spatialexperiment:


depends bioconductor-summarizedexperiment:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mousegastrulationdata

and update with::

   mamba update bioconductor-mousegastrulationdata

To create a new environment, run:

mamba create --name myenvname bioconductor-mousegastrulationdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-mousegastrulationdata/tags`_ for valid values for ``<tag>``)

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