recipe bioconductor-mpfe

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/MPFE.html

License:

GPL (>= 3)

Recipe:

/bioconductor-mpfe/meta.yaml

Links:

biotools: mpfe, doi: 10.1186/s12859-015-0600-6

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

package bioconductor-mpfe

(downloads) docker_bioconductor-mpfe

versions:
1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.23.0-0,  1.22.0-0, 

1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.23.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mpfe

and update with::

   mamba update bioconductor-mpfe

To create a new environment, run:

mamba create --name myenvname bioconductor-mpfe

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mpfe:<tag>

(see `bioconductor-mpfe/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mpfe/README.html)