recipe bioconductor-msa

The ‘msa’ package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/msa.html

License

GPL (>= 2)

Recipe

/bioconductor-msa/meta.yaml

package bioconductor-msa

Versions

1.14.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-rcpp >=0.11.1

Required By

• bioconductor-lymphoseq

• bioconductor-odseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msa

and update with:

conda update bioconductor-msa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msa:<tag>

(see bioconductor-msa/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msa/README.html)