-
recipe
bioconductor-msa
Multiple Sequence Alignment
- Homepage
- License
GPL (>= 2)
- Recipe
The 'msa' package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade.
-
package
bioconductor-msa
¶ -
- Versions
1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
- Depends
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biostrings
>=2.58.0,<2.59.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
r-rcpp
>=0.11.1
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-msa
and update with:
conda update bioconductor-msa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-msa:<tag>
(see bioconductor-msa/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-msa/README.html)