recipe bioconductor-msbackendmgf

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files






Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

package bioconductor-msbackendmgf

(downloads) docker_bioconductor-msbackendmgf



depends bioconductor-biocparallel:


depends bioconductor-iranges:


depends bioconductor-mscoreutils:


depends bioconductor-s4vectors:


depends bioconductor-spectra:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-msbackendmgf

and update with::

   mamba update bioconductor-msbackendmgf

To create a new environment, run:

mamba create --name myenvname bioconductor-msbackendmgf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-msbackendmgf/tags`_ for valid values for ``<tag>``)

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