recipe bioconductor-mscoreutils

Core Utils for Mass Spectrometry Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MsCoreUtils.html

License:

Artistic-2.0

Recipe:

/bioconductor-mscoreutils/meta.yaml

MsCoreUtils defines low-level functions for mass spectrometry data and is independent of any high-level data structures. These functions include mass spectra processing functions (noise estimation, smoothing, binning), quantitative aggregation functions (median polish, robust summarisation, …), missing data imputation, data normalisation (quantiles, vsn, …) as well as misc helper functions, that are used across high-level data structure within the R for Mass Spectrometry packages.

package bioconductor-mscoreutils

Versions:

1.10.0-1,  1.10.0-0,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-clue

• r-mass

• r-rcpp

Required By:

• bioconductor-xcms

• bioconductor-metabocoreutils

• bioconductor-msnbase

• bioconductor-metaboannotation

• bioconductor-compounddb

• bioconductor-msfeatures

• bioconductor-psmatch

• bioconductor-qmtools

• bioconductor-msbackendmgf

• bioconductor-qfeatures

• bioconductor-metcirc

• bioconductor-msbackendmassbank

• bioconductor-spectra

• bioconductor-scp

• bioconductor-msbackendmsp

• bioconductor-msbackendrawfilereader

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mscoreutils

and update with:

conda update bioconductor-mscoreutils

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mscoreutils:<tag>

(see bioconductor-mscoreutils/tags for valid values for <tag>)

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