recipe bioconductor-msexperiment

Infrastructure for Mass Spectrometry Experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MsExperiment.html

License:

Artistic-2.0

Recipe:

/bioconductor-msexperiment/meta.yaml

Infrastructure to store and manage all aspects related to a complete proteomics or metabolomics mass spectrometry (MS) experiment. The MsExperiment package provides light-weight and flexible containers for MS experiments building on the new MS infrastructure provided by the Spectra, QFeatures and related packages. Along with raw data representations, links to original data files and sample annotations, additional metadata or annotations can also be stored within the MsExperiment container. To guarantee maximum flexibility only minimal constraints are put on the type and content of the data within the containers.

package bioconductor-msexperiment

Versions:

1.0.0-0

Depends:

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-protgenerics >=1.30.0,<1.31.0

• bioconductor-qfeatures >=1.8.0,<1.9.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-spectra >=1.8.0,<1.9.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msexperiment

and update with:

conda update bioconductor-msexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msexperiment:<tag>

(see bioconductor-msexperiment/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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