recipe bioconductor-msmseda

Exploratory Data Analysis of LC-MS/MS data by spectral counts

Homepage

https://bioconductor.org/packages/3.12/bioc/html/msmsEDA.html

License

GPL-2

Recipe

/bioconductor-msmseda/meta.yaml

Links

biotools: msmseda, doi: 10.1038/nmeth.3252

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

package bioconductor-msmseda

Versions

1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0,  1.16.0-0

Depends

• bioconductor-msnbase >=2.16.0,<2.17.0

• r-base >=4.0,<4.1.0a0

• r-gplots

• r-mass

• r-rcolorbrewer

Required By

• bioconductor-msmstests

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msmseda

and update with:

conda update bioconductor-msmseda

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msmseda:<tag>

(see bioconductor-msmseda/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msmseda/README.html)