recipe bioconductor-msnbase

MSnbase provides infrastructure for manipulation, processing and visualisation of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MSnbase.html

License

Artistic-2.0

Recipe

/bioconductor-msnbase/meta.yaml

Links

biotools: msnbase

package bioconductor-msnbase

(downloads) docker_bioconductor-msnbase

Versions

2.8.3-0, 2.8.2-0, 2.4.0-1, 2.4.0-0, 2.2.0-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-impute

>=1.56.0,<1.57.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-mzid

>=1.20.0,<1.21.0

Depends bioconductor-mzr

>=2.16.0,<2.17.0

Depends bioconductor-pcamethods

>=1.74.0,<1.75.0

Depends bioconductor-preprocesscore

>=1.44.0,<1.45.0

Depends bioconductor-protgenerics

>=1.14.0,<1.15.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-vsn

>=3.50.0,<3.51.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-digest

Depends r-ggplot2

Depends r-lattice

Depends r-maldiquant

>=1.16

Depends r-mass

Depends r-plyr

Depends r-rcpp

Depends r-scales

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msnbase

and update with:

conda update bioconductor-msnbase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msnbase:<tag>

(see bioconductor-msnbase/tags for valid values for <tag>)