recipe bioconductor-msnbase

Base Functions and Classes for Mass Spectrometry and Proteomics

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MSnbase.html

License

Artistic-2.0

Recipe

/bioconductor-msnbase/meta.yaml

Links

biotools: msnbase

MSnbase provides infrastructure for manipulation, processing and visualisation of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.

package bioconductor-msnbase

Versions

2.14.1-0,  2.12.0-0,  2.10.1-0,  2.8.3-0,  2.8.2-0,  2.4.0-1,  2.4.0-0,  2.2.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-impute >=1.62.0,<1.63.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-mzid >=1.26.0,<1.27.0

• bioconductor-mzr >=2.22.0,<2.23.0

• bioconductor-pcamethods >=1.80.0,<1.81.0

• bioconductor-preprocesscore >=1.50.0,<1.51.0

• bioconductor-protgenerics >=1.20.0,<1.21.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-vsn >=3.56.0,<3.57.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-digest

• r-ggplot2

• r-lattice

• r-maldiquant >=1.16

• r-mass

• r-plyr

• r-rcpp

• r-scales

• r-xml

Required By

• r-minems2

• bioconductor-qplexdata

• bioconductor-dapar

• bioconductor-dapardata

• bioconductor-xcms

• bioconductor-prolocgui

• bioconductor-autotuner

• bioconductor-msnid

• bioconductor-clumsid

• bioconductor-proteomicsannotationhubdata

• r-msqrob

• r-metaboanalyst

• bioconductor-cliquems

• bioconductor-prolocdata

• bioconductor-rmassbank

• bioconductor-dep

• bioconductor-msmseda

• bioconductor-synapter

• bioconductor-proloc

• bioconductor-topdownr

• bioconductor-msstatsqc

• bioconductor-rforproteomics

• bioconductor-metcirc

• bioconductor-msmstests

• bioconductor-prince

• bioconductor-peakpanther

• bioconductor-qplexanalyzer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msnbase

and update with:

conda update bioconductor-msnbase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msnbase:<tag>

(see bioconductor-msnbase/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msnbase/README.html)