bioconductor-msnid

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Extracts MS/MS ID data from mzIdentML (leveraging mzID package) or text files. After collating the search results from multiple datasets it assesses their identification quality and optimize filtering criteria to achieve the maximum number of identifications while not exceeding a specified false discovery rate. Also contains a number of utilities to explore the MS/MS results and assess missed and irregular enzymatic cleavages, mass measurement accuracy, etc.

Home http://bioconductor.org/packages/3.7/bioc/html/MSnID.html
Versions 1.12.1
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msnid
Links biotools: msnid, doi: 10.1038/nmeth.3252

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msnid

and update with:

conda update bioconductor-msnid

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-msnid.