recipe bioconductor-msprep

Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MSPrep.html

License:

GPL-3

Recipe:

/bioconductor-msprep/meta.yaml

Package performs summarization of replicates, filtering by frequency, several different options for imputing missing data, and a variety of options for transforming, batch correcting, and normalizing data.

package bioconductor-msprep

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-pcamethods >=1.90.0,<1.91.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-sva >=3.46.0,<3.47.0

• r-base >=4.2,<4.3.0a0

• r-crmn

• r-dplyr >=0.7

• r-magrittr

• r-missforest

• r-rlang

• r-stringr

• r-tibble >=1.2

• r-tidyr

• r-vim

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msprep

and update with:

conda update bioconductor-msprep

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msprep:<tag>

(see bioconductor-msprep/tags for valid values for <tag>)

Download stats

Link to this page

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