bioconductor-mspurity

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Assess the contribution of the targeted precursor in fragmentation acquired or anticipated isolation windows using a metric called “precursor purity”. Also provides simple processing steps (averaging, filtering, blank subtraction, etc) for DI-MS data. Works for both LC-MS(/MS) and DI-MS(/MS) data. Spectral matching of fragmentation spectra can also be run against a SQLite database of library spectra.

Home http://bioconductor.org/packages/3.6/bioc/html/msPurity.html
Versions 1.3.9, 1.4.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mspurity

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mspurity

and update with:

conda update bioconductor-mspurity

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-mspurity.