recipe bioconductor-msqc1

Sigma mix MSQC1 data

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/msqc1.html

License:

GPL

Recipe:

/bioconductor-msqc1/meta.yaml

contains eight technical replicate data set and a three replicate dilution series of the MS Qual/Quant Quality Control Mix standard sample (Sigma-Aldrich, Buchs, Switzerland) measured on five different mass spectrometer platforms at the Functional Genomics Center Zurich.

package bioconductor-msqc1

(downloads) docker_bioconductor-msqc1

versions:
1.34.0-0,  1.30.0-0,  1.28.0-0,  1.25.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0, 

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.25.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-lattice:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-msqc1

and update with::

   mamba update bioconductor-msqc1

To create a new environment, run:

mamba create --name myenvname bioconductor-msqc1

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-msqc1:<tag>

(see `bioconductor-msqc1/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msqc1/README.html)