recipe bioconductor-msstatslip

LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MSstatsLiP.html

License:

Artistic-2.0

Recipe:

/bioconductor-msstatslip/meta.yaml

Tools for LiP peptide and protein significance analysis. Provides functions for summarization, estimation of LiP peptide abundance, and detection of changes across conditions. Utilizes functionality across the MSstats family of packages.

package bioconductor-msstatslip

Versions:

1.3.1-1,  1.3.1-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-msstats >=4.6.0,<4.7.0

• bioconductor-msstatsconvert >=1.8.0,<1.9.0

• bioconductor-msstatsptm >=2.0.0,<2.1.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-checkmate

• r-data.table

• r-dplyr

• r-factoextra

• r-ggplot2

• r-ggpubr

• r-gridextra

• r-purrr

• r-rcpp

• r-scales

• r-stringr

• r-tibble

• r-tidyr

• r-tidyverse

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msstatslip

and update with:

conda update bioconductor-msstatslip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msstatslip:<tag>

(see bioconductor-msstatslip/tags for valid values for <tag>)

Download stats

Link to this page

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