recipe bioconductor-msstatsshiny

MSstats GUI for Statistical Anaylsis of Proteomics Experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MSstatsShiny.html

License:

Artistic-2.0

Recipe:

/bioconductor-msstatsshiny/meta.yaml

MSstatsShiny is an R-Shiny graphical user interface (GUI) integrated with the R packages MSstats, MSstatsTMT, and MSstatsPTM. It provides a point and click end-to-end analysis pipeline applicable to a wide variety of experimental designs. These include data-dependedent acquisitions (DDA) which are label-free or tandem mass tag (TMT)-based, as well as DIA, SRM, and PRM acquisitions and those targeting post-translational modifications (PTMs). The application automatically saves users selections and builds an R script that recreates their analysis, supporting reproducible data analysis.

package bioconductor-msstatsshiny

Versions:

1.0.0-0

Depends:

• bioconductor-marray >=1.76.0,<1.77.0

• bioconductor-msstats >=4.6.0,<4.7.0

• bioconductor-msstatsconvert >=1.8.0,<1.9.0

• bioconductor-msstatsptm >=2.0.0,<2.1.0

• bioconductor-msstatstmt >=2.6.0,<2.7.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dplyr

• r-dt

• r-ggplot2

• r-ggrepel

• r-gplots

• r-hmisc

• r-htmltools

• r-shiny

• r-shinybs

• r-shinybusy

• r-shinyjs

• r-tidyr

• r-uuid

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msstatsshiny

and update with:

conda update bioconductor-msstatsshiny

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msstatsshiny:<tag>

(see bioconductor-msstatsshiny/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msstatsshiny/README.html)