recipe bioconductor-mtbls2

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/mtbls2.html

License:

CC0

Recipe:

/bioconductor-mtbls2/meta.yaml

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

package bioconductor-mtbls2

(downloads) docker_bioconductor-mtbls2

versions:
1.32.0-0,  1.30.0-0,  1.27.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.1-0,  1.19.0-0,  1.17.0-0, 

1.32.0-0,  1.30.0-0,  1.27.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.1-0,  1.19.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mtbls2

and update with::

   mamba update bioconductor-mtbls2

To create a new environment, run:

mamba create --name myenvname bioconductor-mtbls2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mtbls2:<tag>

(see `bioconductor-mtbls2/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mtbls2/README.html)