recipe bioconductor-multiassayexperiment

Software for the integration of multi-omics experiments in Bioconductor

Homepage

https://bioconductor.org/packages/3.10/bioc/html/MultiAssayExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-multiassayexperiment/meta.yaml

Links

biotools: multiassayexperiment, doi: 10.1101/144774

MultiAssayExperiment harmonizes data management of multiple assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames.

package bioconductor-multiassayexperiment

Versions

1.12.0-0, 1.10.4-0, 1.8.1-0, 1.6.0-0, 1.4.9-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-tidyr

Required By

• bioconductor-hipathia

• bioconductor-animalcules

• bioconductor-affixcan

• bioconductor-omicsprint

• bioconductor-cager

• bioconductor-curatedtcgadata

• bioconductor-hmp2data

• bioconductor-classifyr

• bioconductor-elmer

• bioconductor-intad

• bioconductor-evaluomer

• bioconductor-mofa

• bioconductor-linkhd

• bioconductor-omicspcadata

• bioconductor-omicspca

• bioconductor-glmsparsenet

• bioconductor-missrows

• bioconductor-gopro

• bioconductor-yrimulti

• bioconductor-tcgautils

• bioconductor-amaretto

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multiassayexperiment

and update with:

conda update bioconductor-multiassayexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multiassayexperiment:<tag>

(see bioconductor-multiassayexperiment/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multiassayexperiment/README.html)