- recipe bioconductor-multiassayexperiment
Software for the integration of multi-omics experiments in Bioconductor
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/MultiAssayExperiment.html
- License
Artistic-2.0
- Recipe
- Links
biotools: multiassayexperiment, doi: 10.1101/144774
MultiAssayExperiment harmonizes data management of multiple experimental assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames. Facilities are provided for reshaping data into wide and long formats for adaptability to graphing and downstream analysis.
- package bioconductor-multiassayexperiment¶
-
- Versions
1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.4-0
,1.8.1-0
,1.6.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.4-0
,1.8.1-0
,1.6.0-0
,1.4.9-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-multiassayexperiment
and update with:
conda update bioconductor-multiassayexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-multiassayexperiment:<tag>
(see bioconductor-multiassayexperiment/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-multiassayexperiment/README.html)