recipe bioconductor-multiassayexperiment

MultiAssayExperiment harmonizes data management of multiple assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/MultiAssayExperiment.html License:Artistic-2.0 Recipe:/bioconductor-multiassayexperiment/meta.yaml Links:biotools: multiassayexperiment, doi: 10.1101/144774

package bioconductor-multiassayexperiment

Versions:

1.8.1-0, 1.6.0-0, 1.4.9-0

Depends:

• bioconductor-biobase >=2.42.0,<2.43.0
• bioconductor-biocgenerics >=0.28.0,<0.29.0
• bioconductor-genomicranges >=1.34.0,<1.35.0
• bioconductor-iranges >=2.16.0,<2.17.0
• bioconductor-s4vectors >=0.20.0,<0.21.0
• bioconductor-summarizedexperiment >=1.12.0,<1.13.0
• r-base >=3.5.1,<3.5.2.0a0
• r-tidyr

Required By:

• bioconductor-tcgautils
• bioconductor-yrimulti
• bioconductor-intad
• bioconductor-hipathia
• bioconductor-curatedtcgadata
• bioconductor-cager
• bioconductor-omicspcadata
• bioconductor-glmsparsenet
• bioconductor-gopro
• bioconductor-omicsprint
• bioconductor-elmer
• bioconductor-missrows
• bioconductor-classifyr
• bioconductor-affixcan

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multiassayexperiment

and update with:

conda update bioconductor-multiassayexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multiassayexperiment:<tag>

(see bioconductor-multiassayexperiment/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multiassayexperiment/README.html)