recipe bioconductor-multiassayexperiment

MultiAssayExperiment harmonizes data management of multiple assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MultiAssayExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-multiassayexperiment/meta.yaml

Links

biotools: multiassayexperiment, doi: 10.1101/144774

package bioconductor-multiassayexperiment

Versions

1.8.1-0, 1.6.0-0, 1.4.9-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• r-base >=3.5.1,<3.5.2.0a0

• r-tidyr

Required By

• bioconductor-omicsprint

• bioconductor-curatedtcgadata

• bioconductor-omicspcadata

• bioconductor-elmer

• bioconductor-gopro

• bioconductor-hipathia

• bioconductor-classifyr

• bioconductor-missrows

• bioconductor-cager

• bioconductor-yrimulti

• bioconductor-intad

• bioconductor-affixcan

• bioconductor-glmsparsenet

• bioconductor-tcgautils

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multiassayexperiment

and update with:

conda update bioconductor-multiassayexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multiassayexperiment:<tag>

(see bioconductor-multiassayexperiment/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multiassayexperiment/README.html)