recipe bioconductor-multiassayexperiment

Software for the integration of multi-omics experiments in Bioconductor

Homepage

https://bioconductor.org/packages/3.12/bioc/html/MultiAssayExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-multiassayexperiment/meta.yaml

Links

biotools: multiassayexperiment, doi: 10.1101/144774

MultiAssayExperiment harmonizes data management of multiple experimental assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames. Facilities are provided for reshaping data into wide and long formats for adaptability to graphing and downstream analysis.

package bioconductor-multiassayexperiment

Versions

1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.4-0,  1.8.1-0,  1.6.0-0,  1.4.9-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• r-base >=4.0,<4.1.0a0

• r-tidyr

Required By

• bioconductor-elmer

• bioconductor-timirgen

• bioconductor-omicsprint

• bioconductor-glmsparsenet

• bioconductor-mofa

• bioconductor-cbioportaldata

• bioconductor-omicspca

• bioconductor-missrows

• bioconductor-curatedtcgadata

• bioconductor-singlecellmultimodal

• bioconductor-intad

• bioconductor-moma

• bioconductor-multibac

• bioconductor-hmp2data

• bioconductor-hipathia

• bioconductor-classifyr

• bioconductor-corral

• bioconductor-padma

• bioconductor-tcgautils

• bioconductor-omicspcadata

• bioconductor-linkhd

• bioconductor-scp

• bioconductor-amaretto

• bioconductor-gopro

• bioconductor-metabolomicsworkbenchr

• bioconductor-cager

• bioconductor-qfeatures

• bioconductor-affixcan

• bioconductor-evaluomer

• bioconductor-animalcules

• bioconductor-netdx

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multiassayexperiment

and update with:

conda update bioconductor-multiassayexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multiassayexperiment:<tag>

(see bioconductor-multiassayexperiment/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multiassayexperiment/README.html)