recipe bioconductor-multiassayexperiment

Software for the integration of multi-omics experiments in Bioconductor

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MultiAssayExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-multiassayexperiment/meta.yaml

Links

biotools: multiassayexperiment, doi: 10.1101/144774

MultiAssayExperiment harmonizes data management of multiple assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames.

package bioconductor-multiassayexperiment

Versions

1.14.0-0,  1.12.0-0,  1.10.4-0,  1.8.1-0,  1.6.0-0,  1.4.9-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-tidyr

Required By

• bioconductor-mofa

• bioconductor-elmer

• bioconductor-omicspca

• bioconductor-singlecellmultimodal

• bioconductor-cbioportaldata

• bioconductor-omicsprint

• bioconductor-yrimulti

• bioconductor-amaretto

• bioconductor-intad

• bioconductor-moma

• bioconductor-tcgautils

• bioconductor-missrows

• bioconductor-linkhd

• bioconductor-gopro

• bioconductor-hmp2data

• bioconductor-animalcules

• bioconductor-hipathia

• bioconductor-classifyr

• bioconductor-glmsparsenet

• bioconductor-omicspcadata

• bioconductor-cager

• bioconductor-affixcan

• bioconductor-netdx

• bioconductor-evaluomer

• bioconductor-curatedtcgadata

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multiassayexperiment

and update with:

conda update bioconductor-multiassayexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multiassayexperiment:<tag>

(see bioconductor-multiassayexperiment/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multiassayexperiment/README.html)