recipe bioconductor-multimodalexperiment

Integrative Bulk and Single-Cell Experiment Container

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/MultimodalExperiment.html

License:

Artistic-2.0

Recipe:

/bioconductor-multimodalexperiment/meta.yaml

MultimodalExperiment is an S4 class that integrates bulk and single-cell experiment data; it is optimally storage-efficient, and its methods are exceptionally fast. It effortlessly represents multimodal data of any nature and features normalized experiment, subject, sample, and cell annotations, which are related to underlying biological experiments through maps. Its coordination methods are opt-in and employ database-like join operations internally to deliver fast and flexible management of multimodal data.

package bioconductor-multimodalexperiment

versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-biocgenerics:

>=0.52.0,<0.53.0

depends bioconductor-iranges:

>=2.40.0,<2.41.0

depends bioconductor-multiassayexperiment:

>=1.32.0,<1.33.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-multimodalexperiment

and update with::

   mamba update bioconductor-multimodalexperiment

To create a new environment, run:

mamba create --name myenvname bioconductor-multimodalexperiment

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-multimodalexperiment:<tag>

(see `bioconductor-multimodalexperiment/tags`_ for valid values for ``<tag>``)

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Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multimodalexperiment/README.html)