recipe bioconductor-multisight

Multi-omics Classification, Functional Enrichment and Network Inference analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/multiSight.html

License:

CeCILL + file LICENSE

Recipe:

/bioconductor-multisight/meta.yaml

multiSight is an R package providing functions to analyze your omic datasets in a multi-omics manner based on Stouffer's p-value pooling and multi-block statistical methods. For each omic dataset you furnish, multiSight provides classification models with feature selection you can use as biosignature: (i) To forecast phenotypes (e.g. to diagnostic tasks, histological subtyping), (ii) To design Pathways and gene ontology enrichments (Over Representation Analysis), (iii) To build Network inference linked to PubMed querying to make assumptions easier and data-driven. Main analysis are embedded in an user-friendly graphical interface.

package bioconductor-multisight

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biosigner >=1.26.0,<1.27.0

• bioconductor-clusterprofiler >=4.6.0,<4.7.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-enrichplot >=1.18.0,<1.19.0

• bioconductor-mixomics >=6.22.0,<6.23.0

• bioconductor-reactomepa >=1.42.0,<1.43.0

• bioconductor-rwikipathways >=1.18.0,<1.19.0

• r-anylib

• r-base >=4.2,<4.3.0a0

• r-caret

• r-config

• r-dplyr

• r-dt

• r-easypubmed

• r-ggnewscale

• r-golem

• r-htmltools

• r-igraph

• r-infotheo

• r-metap

• r-networkd3

• r-ppcor

• r-r6

• r-rmarkdown

• r-shiny

• r-shinydashboard

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-multisight

and update with:

conda update bioconductor-multisight

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multisight:<tag>

(see bioconductor-multisight/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-multisight/README.html)