recipe bioconductor-multiwgcna

multiWGCNA

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/multiWGCNA.html

License:

GPL-3

Recipe:

/bioconductor-multiwgcna/meta.yaml

An R package for deeping mining gene co-expression networks in multi-trait expression data. Provides functions for analyzing, comparing, and visualizing WGCNA networks across conditions. multiWGCNA was designed to handle the common case where there are multiple biologically meaningful sample traits, such as disease vs wildtype across development or anatomical region.

package bioconductor-multiwgcna

versions:

1.0.0-0

depends bioconductor-dcanr:

>=1.18.0,<1.19.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-cowplot:

depends r-data.table:

depends r-dplyr:

depends r-flashclust:

depends r-ggalluvial:

depends r-ggplot2:

depends r-ggrepel:

depends r-igraph:

depends r-patchwork:

depends r-readr:

depends r-reshape2:

depends r-scales:

depends r-stringr:

depends r-wgcna:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-multiwgcna

and update with::

   mamba update bioconductor-multiwgcna

To create a new environment, run:

mamba create --name myenvname bioconductor-multiwgcna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-multiwgcna:<tag>

(see `bioconductor-multiwgcna/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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