recipe bioconductor-muscdata

Multi-sample multi-group scRNA-seq data

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/muscData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-muscdata/meta.yaml

Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.

package bioconductor-muscdata

(downloads) docker_bioconductor-muscdata

versions:
1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0, 

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-data-packages:

>=20250104

depends bioconductor-experimenthub:

>=2.14.0,<2.15.0

depends bioconductor-singlecellexperiment:

>=1.28.0,<1.29.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-muscdata

and update with::

   mamba update bioconductor-muscdata

To create a new environment, run:

mamba create --name myenvname bioconductor-muscdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-muscdata:<tag>

(see `bioconductor-muscdata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-muscdata/README.html)