recipe bioconductor-myvariant

Accesses MyVariant.info variant query and annotation services

Homepage

https://bioconductor.org/packages/3.11/bioc/html/myvariant.html

License

Artistic-2.0

Recipe

/bioconductor-myvariant/meta.yaml

Links

biotools: myvariant, doi: 10.1101/035667

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

package bioconductor-myvariant

Versions

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-variantannotation >=1.34.0,<1.35.0

• r-base >=4.0,<4.1.0a0

• r-hmisc

• r-httr

• r-jsonlite

• r-magrittr

• r-plyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-myvariant

and update with:

conda update bioconductor-myvariant

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-myvariant:<tag>

(see bioconductor-myvariant/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-myvariant/README.html)