recipe bioconductor-mzid

An mzIdentML parser for R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/mzID.html

License:

GPL (>= 2)

Recipe:

/bioconductor-mzid/meta.yaml

Links:

biotools: mzid, doi: 10.1038/nmeth.3252

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.

package bioconductor-mzid

Versions:

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0, 

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.1-0,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends:

• bioconductor-protgenerics >=1.30.0,<1.31.0

• r-base >=4.2,<4.3.0a0

• r-doparallel

• r-foreach

• r-iterators

• r-plyr

• r-xml

Required By:

• r-msqrob

• bioconductor-msnid

• bioconductor-targetdecoy

• bioconductor-msnbase

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mzid

and update with:

conda update bioconductor-mzid

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mzid:<tag>

(see bioconductor-mzid/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mzid/README.html)