recipe bioconductor-mzid

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less ‘pretty’ output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/mzID.html

License

GPL (>= 2)

Recipe

/bioconductor-mzid/meta.yaml

Links

biotools: mzid, doi: 10.1038/nmeth.3252

package bioconductor-mzid

(downloads) docker_bioconductor-mzid

Versions

1.22.0-0, 1.20.1-0, 1.20.0-0, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends bioconductor-protgenerics

>=1.16.0,<1.17.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-doparallel

Depends r-foreach

Depends r-iterators

Depends r-plyr

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mzid

and update with:

conda update bioconductor-mzid

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mzid:<tag>

(see bioconductor-mzid/tags for valid values for <tag>)