recipe bioconductor-nanoporernaseq

Nanopore RNA-Seq Example data

Homepage

https://bioconductor.org/packages/3.13/data/experiment/html/NanoporeRNASeq.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-nanoporernaseq/meta.yaml

The NanoporeRNASeq package contains long read RNA-Seq data generated using Oxford Nanopore Sequencing. The data consists of 6 samples from two human cell lines (K562 and MCF7) that were generated by the SG-NEx project. Each of these cell lines has three replicates, with 1 direct RNA sequencing data and 2 cDNA sequencing data. Reads are aligned to chromosome 22 (Grch38) and stored as bam files. The original data is from the SG-NEx project.

package bioconductor-nanoporernaseq

(downloads) docker_bioconductor-nanoporernaseq

Versions

1.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nanoporernaseq

and update with:

conda update bioconductor-nanoporernaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanoporernaseq:<tag>

(see bioconductor-nanoporernaseq/tags for valid values for <tag>)

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