Package Recipe 'bioconductor-nanoporernaseq'

recipe bioconductor-nanoporernaseq

Nanopore RNA-Seq Example data

Homepage:: https://bioconductor.org/packages/3.16/data/experiment/html/NanoporeRNASeq.html
License:: GPL-3 + file LICENSE
Recipe:: /bioconductor-nanoporernaseq/meta.yaml

The NanoporeRNASeq package contains long read RNA-Seq data generated using Oxford Nanopore Sequencing. The data consists of 6 samples from two human cell lines (K562 and MCF7) that were generated by the SG-NEx project. Each of these cell lines has three replicates, with 1 direct RNA sequencing data and 2 cDNA sequencing data. Reads are aligned to chromosome 22 (Grch38) and stored as bam files. The original data is from the SG-NEx project.

package bioconductor-nanoporernaseq¶

Versions:

1.8.0-0, 1.4.0-1, 1.4.0-0, 1.2.0-0, 1.0.0-1, 1.0.0-0

Depends:

bioconductor-data-packages >=20221108
bioconductor-experimenthub >=2.6.0,<2.7.0
curl
r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nanoporernaseq

and update with:

conda update bioconductor-nanoporernaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanoporernaseq:<tag>

(see bioconductor-nanoporernaseq/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nanoporernaseq/README.html)