recipe bioconductor-nanostringnctools

NanoString nCounter Tools

Homepage

https://bioconductor.org/packages/3.14/bioc/html/NanoStringNCTools.html

License

MIT

Recipe

/bioconductor-nanostringnctools/meta.yaml

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

package bioconductor-nanostringnctools

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-ggbeeswarm

• r-ggiraph

• r-ggplot2

• r-ggthemes

• r-pheatmap

• r-rcolorbrewer

Required By

• bioconductor-geomxtools

• bioconductor-geodiff

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nanostringnctools

and update with:

conda update bioconductor-nanostringnctools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanostringnctools:<tag>

(see bioconductor-nanostringnctools/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nanostringnctools/README.html)