recipe bioconductor-nanostringnctools

NanoString nCounter Tools

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/NanoStringNCTools.html

License:

MIT

Recipe:

/bioconductor-nanostringnctools/meta.yaml

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

package bioconductor-nanostringnctools

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-ggbeeswarm

• r-ggiraph

• r-ggplot2

• r-ggthemes

• r-pheatmap

• r-rcolorbrewer

Required By:

• bioconductor-geodiff

• bioconductor-geomxtools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nanostringnctools

and update with:

conda update bioconductor-nanostringnctools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanostringnctools:<tag>

(see bioconductor-nanostringnctools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nanostringnctools/README.html)