recipe bioconductor-nanostringqcpro

NanoStringQCPro provides a set of quality metrics that can be used to assess the quality of NanoString mRNA gene expression data – i.e. to identify outlier probes and outlier samples. It also provides different background subtraction and normalization approaches for this data. It outputs suggestions for flagging samples/probes and an easily sharable html quality control output.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/NanoStringQCPro.html

License

Artistic-2.0

Recipe

/bioconductor-nanostringqcpro/meta.yaml

package bioconductor-nanostringqcpro

(downloads) docker_bioconductor-nanostringqcpro

Versions

1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nanostringqcpro

and update with:

conda update bioconductor-nanostringqcpro

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanostringqcpro:<tag>

(see bioconductor-nanostringqcpro/tags for valid values for <tag>)