recipe bioconductor-nanostringqcpro

Quality metrics and data processing methods for NanoString mRNA gene expression data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/NanoStringQCPro.html

License:

Artistic-2.0

Recipe:

/bioconductor-nanostringqcpro/meta.yaml

NanoStringQCPro provides a set of quality metrics that can be used to assess the quality of NanoString mRNA gene expression data -- i.e. to identify outlier probes and outlier samples. It also provides different background subtraction and normalization approaches for this data. It outputs suggestions for flagging samples/probes and an easily sharable html quality control output.

package bioconductor-nanostringqcpro

(downloads) docker_bioconductor-nanostringqcpro

Versions:

1.30.0-01.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.14.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nanostringqcpro

and update with:

conda update bioconductor-nanostringqcpro

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanostringqcpro:<tag>

(see bioconductor-nanostringqcpro/tags for valid values for <tag>)

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