recipe bioconductor-ncdfflow

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/ncdfFlow.html

License:

AGPL-3.0-only

Recipe:

/bioconductor-ncdfflow/meta.yaml

Links:

biotools: ncdfflow, doi: 10.1016/j.copbio.2012.09.003

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

package bioconductor-ncdfflow

versions:

2.48.0-0,  2.46.0-0,  2.44.0-1,  2.44.0-0,  2.40.0-2,  2.40.0-1,  2.40.0-0,  2.38.0-0,  2.36.0-2, 

2.48.0-0,  2.46.0-0,  2.44.0-1,  2.44.0-0,  2.40.0-2,  2.40.0-1,  2.40.0-0,  2.38.0-0,  2.36.0-2,  2.36.0-1,  2.36.0-0,  2.34.0-0,  2.32.0-0,  2.30.1-0,  2.28.1-0,  2.28.0-0,  2.26.0-0,  2.24.0-1,  2.24.0-0,  2.22.2-0,  2.22.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-biobase:

>=2.62.0,<2.63.0a0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-biocgenerics:

>=0.48.1,<0.49.0a0

depends bioconductor-flowcore:

>=2.14.0,<2.15.0

depends bioconductor-flowcore:

>=2.14.0,<2.15.0a0

depends bioconductor-rhdf5lib:

>=1.24.0,<1.25.0

depends bioconductor-rhdf5lib:

>=1.24.0,<1.25.0a0

depends bioconductor-zlibbioc:

>=1.48.0,<1.49.0

depends bioconductor-zlibbioc:

>=1.48.0,<1.49.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-bh:

depends r-cpp11:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ncdfflow

and update with::

   mamba update bioconductor-ncdfflow

To create a new environment, run:

mamba create --name myenvname bioconductor-ncdfflow

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ncdfflow:<tag>

(see `bioconductor-ncdfflow/tags`_ for valid values for ``<tag>``)

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