recipe bioconductor-ncdfflow

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Homepage

https://bioconductor.org/packages/3.12/bioc/html/ncdfFlow.html

License

Artistic-2.0

Recipe

/bioconductor-ncdfflow/meta.yaml

Links

biotools: ncdfflow, doi: 10.1016/j.copbio.2012.09.003

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

package bioconductor-ncdfflow

Versions

2.36.0-1,  2.36.0-0,  2.34.0-0,  2.32.0-0,  2.30.1-0,  2.28.1-0,  2.28.0-0,  2.26.0-0,  2.24.0-1, 

2.36.0-1,  2.36.0-0,  2.34.0-0,  2.32.0-0,  2.30.1-0,  2.28.1-0,  2.28.0-0,  2.26.0-0,  2.24.0-1,  2.24.0-0,  2.22.2-0,  2.22.0-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-flowcore >=2.2.0,<2.3.0

• bioconductor-rhdf5lib >=1.12.0,<1.13.0

• bioconductor-zlibbioc >=1.36.0,<1.37.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=7.5.0

• r-base >=4.0,<4.1.0a0

• r-bh

• r-rcpp

• r-rcpparmadillo

Required By

• bioconductor-flowstats

• bioconductor-ggcyto

• bioconductor-flowworkspace

• bioconductor-opencyto

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ncdfflow

and update with:

conda update bioconductor-ncdfflow

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ncdfflow:<tag>

(see bioconductor-ncdfflow/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ncdfflow/README.html)