- recipe bioconductor-ncrnatools
An R toolkit for non-coding RNA
ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.
- package bioconductor-ncrnatools¶
- depends bioconductor-genomicranges:
- depends bioconductor-iranges:
- depends bioconductor-s4vectors:
- depends r-base:
- depends r-ggplot2:
- depends r-httr:
- depends r-xml2:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-ncrnatools and update with:: mamba update bioconductor-ncrnatools
To create a new environment, run:
mamba create --name myenvname bioconductor-ncrnatools
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-ncrnatools:<tag> (see `bioconductor-ncrnatools/tags`_ for valid values for ``<tag>``)