recipe bioconductor-nearbynding

Discern RNA structure proximal to protein binding

Homepage

https://bioconductor.org/packages/3.14/bioc/html/nearBynding.html

License

Artistic-2.0

Recipe

/bioconductor-nearbynding/meta.yaml

Provides a pipeline to discern RNA structure at and proximal to the site of protein binding within regions of the transcriptome defined by the user. CLIP protein-binding data can be input as either aligned BAM or peak-called bedGraph files. RNA structure can either be predicted internally from sequence or users have the option to input their own RNA structure data. RNA structure binding profiles can be visually and quantitatively compared across multiple formats.

package bioconductor-nearbynding

(downloads) docker_bioconductor-nearbynding

Versions

1.4.0-01.2.0-01.0.0-31.0.0-21.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nearbynding

and update with:

conda update bioconductor-nearbynding

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nearbynding:<tag>

(see bioconductor-nearbynding/tags for valid values for <tag>)

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