recipe bioconductor-nempi

Inferring unobserved perturbations from gene expression data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/nempi.html

License:

GPL-3

Recipe:

/bioconductor-nempi/meta.yaml

Takes as input an incomplete perturbation profile and differential gene expression in log odds and infers unobserved perturbations and augments observed ones. The inference is done by iteratively inferring a network from the perturbations and inferring perturbations from the network. The network inference is done by Nested Effects Models.

package bioconductor-nempi

(downloads) docker_bioconductor-nempi

Versions:

1.6.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nempi

and update with:

conda update bioconductor-nempi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nempi:<tag>

(see bioconductor-nempi/tags for valid values for <tag>)

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