recipe bioconductor-netomics

Multi-Omics (time-course) network-based integration and interpretation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/netOmics.html

License:

GPL-3

Recipe:

/bioconductor-netomics/meta.yaml

netOmics is a multi-omics networks builder and explorer. It uses a combination of network inference algorithms and and knowledge-based graphs to build multi-layered networks. The package can be combined with timeOmics to incorporate time-course expression data and build sub-networks from multi-omics kinetic clusters. Finally, from the generated multi-omics networks, propagation analyses allow the identification of missing biological functions (1), multi-omics mechanisms (2) and molecules between kinetic clusters (3). This helps to resolve complex regulatory mechanisms.

package bioconductor-netomics

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-minet >=3.56.0,<3.57.0

• bioconductor-randomwalkrestartmh >=1.18.0,<1.19.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-gprofiler2

• r-igraph

• r-magrittr

• r-purrr

• r-tibble

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-netomics

and update with:

conda update bioconductor-netomics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netomics:<tag>

(see bioconductor-netomics/tags for valid values for <tag>)

Download stats

Link to this page

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