recipe bioconductor-netsam

Network Seriation And Modularization

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/NetSAM.html

License:

LGPL

Recipe:

/bioconductor-netsam/meta.yaml

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a weighted or unweighted network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis. The NetSAM package can also generate correlation network (e.g. co-expression network) based on the input matrix data, perform seriation and modularization analysis for the correlation network and calculate the associations between the sample features and modules or identify the associated GO terms for the modules.

package bioconductor-netsam

Versions:

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-go.db >=3.16.0,<3.17.0

• r-base >=4.2,<4.3.0a0

• r-dbi >=0.5-1

• r-doparallel >=1.0.10

• r-foreach >=1.4.0

• r-igraph >=0.6-1

• r-r2html >=2.2.0

• r-seriation >=1.0-6

• r-survival >=2.37-7

• r-wgcna >=1.34.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-netsam

and update with:

conda update bioconductor-netsam

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netsam:<tag>

(see bioconductor-netsam/tags for valid values for <tag>)

Download stats

Link to this page

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