- recipe bioconductor-netsmooth
Network smoothing for scRNAseq
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/netSmooth.html
- License:
GPL-3
- Recipe:
netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.
- package bioconductor-netsmooth¶
-
- Versions:
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-1
,1.2.0-0
- Depends:
bioconductor-clusterexperiment
>=2.14.0,<2.15.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-scater
>=1.22.0,<1.23.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-netsmooth
and update with:
conda update bioconductor-netsmooth
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-netsmooth:<tag>
(see bioconductor-netsmooth/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-netsmooth/README.html)