recipe bioconductor-netsmooth

Network smoothing for scRNAseq

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/netSmooth.html

License:

GPL-3

Recipe:

/bioconductor-netsmooth/meta.yaml

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

package bioconductor-netsmooth

Versions:

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1,  1.2.0-0

Depends:

• bioconductor-clusterexperiment >=2.14.0,<2.15.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-hdf5array >=1.22.0,<1.23.0

• bioconductor-scater >=1.22.0,<1.23.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-cluster

• r-data.table

• r-entropy

• r-matrix

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-netsmooth

and update with:

conda update bioconductor-netsmooth

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netsmooth:<tag>

(see bioconductor-netsmooth/tags for valid values for <tag>)

Download stats

Link to this page

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