recipe bioconductor-netsmooth

Network smoothing for scRNAseq

Homepage

https://bioconductor.org/packages/3.11/bioc/html/netSmooth.html

License

GPL-3

Recipe

/bioconductor-netsmooth/meta.yaml

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

package bioconductor-netsmooth

(downloads) docker_bioconductor-netsmooth

Versions

1.8.0-01.6.0-01.4.0-11.2.0-11.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-netsmooth

and update with:

conda update bioconductor-netsmooth

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netsmooth:<tag>

(see bioconductor-netsmooth/tags for valid values for <tag>)