-
recipe
bioconductor-netsmooth
Network smoothing for scRNAseq
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/netSmooth.html
- License
GPL-3
- Recipe
netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.
-
package
bioconductor-netsmooth
¶ -
- Versions
1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-1
,1.2.0-0
- Depends
bioconductor-clusterexperiment
>=2.10.0,<2.11.0
bioconductor-delayedarray
>=0.16.0,<0.17.0
bioconductor-hdf5array
>=1.18.0,<1.19.0
bioconductor-scater
>=1.18.0,<1.19.0
bioconductor-singlecellexperiment
>=1.12.0,<1.13.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-netsmooth
and update with:
conda update bioconductor-netsmooth
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-netsmooth:<tag>
(see bioconductor-netsmooth/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-netsmooth/README.html)