- recipe bioconductor-ngscopydata
Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/NGScopyData.html
- License:
GPL (>=2)
- Recipe:
Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).
- package bioconductor-ngscopydata¶
-
- Versions:
1.17.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.9.0-0
,1.8.0-0
,1.6.0-0
,1.17.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.9.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
- Depends:
bioconductor-data-packages
>=20221103
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ngscopydata
and update with:
conda update bioconductor-ngscopydata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ngscopydata:<tag>
(see bioconductor-ngscopydata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ngscopydata/README.html)