recipe bioconductor-ngscopydata

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package



GPL (>=2)



Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).

package bioconductor-ngscopydata

(downloads) docker_bioconductor-ngscopydata



Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ngscopydata

and update with:

conda update bioconductor-ngscopydata

or use the docker container:

docker pull<tag>

(see bioconductor-ngscopydata/tags for valid values for <tag>)