recipe bioconductor-noiseq

Exploratory analysis and differential expression for RNA-seq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/NOISeq.html

License

Artistic-2.0

Recipe

/bioconductor-noiseq/meta.yaml

Links

biotools: noiseq

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

package bioconductor-noiseq

Versions

2.31.0-0,  2.30.0-0,  2.28.0-1,  2.26.1-0,  2.26.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• r-base >=4.0,<4.1.0a0

• r-matrix >=1.2

Required By

• qualimap

• bioconductor-cnvpanelizer

• r-lncpipereporter

• bioconductor-metaseqr

• bioconductor-metaseq

• bioconductor-metaseqr2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-noiseq

and update with:

conda update bioconductor-noiseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-noiseq:<tag>

(see bioconductor-noiseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-noiseq/README.html)