recipe bioconductor-noiseq

Exploratory analysis and differential expression for RNA-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/NOISeq.html

License:

Artistic-2.0

Recipe:

/bioconductor-noiseq/meta.yaml

Links:

biotools: noiseq

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

package bioconductor-noiseq

Versions:

2.42.0-0,  2.38.0-0,  2.36.0-0,  2.34.0-1,  2.34.0-0,  2.31.0-0,  2.30.0-0,  2.28.0-1,  2.26.1-0, 

2.42.0-0,  2.38.0-0,  2.36.0-0,  2.34.0-1,  2.34.0-0,  2.31.0-0,  2.30.0-0,  2.28.0-1,  2.26.1-0,  2.26.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• r-base >=4.2,<4.3.0a0

• r-matrix >=1.2

Required By:

• qualimap

• bioconductor-metaseq

• bioconductor-cnvpanelizer

• r-lncpipereporter

• bioconductor-benchdamic

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-noiseq

and update with:

conda update bioconductor-noiseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-noiseq:<tag>

(see bioconductor-noiseq/tags for valid values for <tag>)

Download stats

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