recipe bioconductor-noiseq

Exploratory analysis and differential expression for RNA-seq data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/NOISeq.html

License:

Artistic-2.0

Recipe:

/bioconductor-noiseq/meta.yaml

Links:

biotools: noiseq

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

package bioconductor-noiseq

(downloads) docker_bioconductor-noiseq

versions:
2.46.0-0,  2.44.0-0,  2.42.0-0,  2.38.0-0,  2.36.0-0,  2.34.0-1,  2.34.0-0,  2.31.0-0,  2.30.0-0, 

2.46.0-0,  2.44.0-0,  2.42.0-0,  2.38.0-0,  2.36.0-0,  2.34.0-1,  2.34.0-0,  2.31.0-0,  2.30.0-0,  2.28.0-1,  2.26.1-0,  2.26.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends r-base:

>=4.3,<4.4.0a0

depends r-matrix:

>=1.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-noiseq

and update with::

   mamba update bioconductor-noiseq

To create a new environment, run:

mamba create --name myenvname bioconductor-noiseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-noiseq:<tag>

(see `bioconductor-noiseq/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-noiseq/README.html)