recipe bioconductor-normalyzerde

Evaluation of normalization methods and calculation of differential expression analysis statistics

Homepage

https://bioconductor.org/packages/3.13/bioc/html/NormalyzerDE.html

License

Artistic-2.0

Recipe

/bioconductor-normalyzerde/meta.yaml

NormalyzerDE provides screening of normalization methods for LC-MS based expression data. It calculates a range of normalized matrices using both existing approaches and a novel time-segmented approach, calculates performance measures and generates an evaluation report. Furthermore, it provides an easy utility for Limma- or ANOVA- based differential expression analysis.

package bioconductor-normalyzerde

Versions

1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-limma >=3.48.0,<3.49.0

• bioconductor-preprocesscore >=1.54.0,<1.55.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• bioconductor-vsn >=3.60.0,<3.61.0

• r-ape

• r-base >=4.1,<4.2.0a0

• r-car

• r-ggforce

• r-ggplot2

• r-mass

• r-matrixstats

• r-raster

• r-rcmdrmisc

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-normalyzerde

and update with:

conda update bioconductor-normalyzerde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-normalyzerde:<tag>

(see bioconductor-normalyzerde/tags for valid values for <tag>)

Download stats

Link to this page

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