-
recipe
bioconductor-normalyzerde
Evaluation of normalization methods and calculation of differential expression analysis statistics
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/NormalyzerDE.html
- License
Artistic-2.0
- Recipe
NormalyzerDE provides screening of normalization methods for LC-MS based expression data. It calculates a range of normalized matrices using both existing approaches and a novel time-segmented approach, calculates performance measures and generates an evaluation report. Furthermore, it provides an easy utility for Limma- or ANOVA- based differential expression analysis.
-
package
bioconductor-normalyzerde
¶ -
- Versions
1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-limma
>=3.46.0,<3.47.0
bioconductor-preprocesscore
>=1.52.0,<1.53.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
bioconductor-vsn
>=3.58.0,<3.59.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-normalyzerde
and update with:
conda update bioconductor-normalyzerde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-normalyzerde:<tag>
(see bioconductor-normalyzerde/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-normalyzerde/README.html)