- recipe bioconductor-normalyzerde
Evaluation of normalization methods and calculation of differential expression analysis statistics
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/NormalyzerDE.html
- License:
Artistic-2.0
- Recipe:
NormalyzerDE provides screening of normalization methods for LC-MS based expression data. It calculates a range of normalized matrices using both existing approaches and a novel time-segmented approach, calculates performance measures and generates an evaluation report. Furthermore, it provides an easy utility for Limma- or ANOVA- based differential expression analysis.
- package bioconductor-normalyzerde¶
-
- Versions:
1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-vsn
>=3.66.0,<3.67.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-normalyzerde
and update with:
conda update bioconductor-normalyzerde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-normalyzerde:<tag>
(see bioconductor-normalyzerde/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-normalyzerde/README.html)