recipe bioconductor-nucleosim

Generate synthetic nucleosome maps

Homepage

https://bioconductor.org/packages/3.11/bioc/html/nucleoSim.html

License

Artistic-2.0

Recipe

/bioconductor-nucleosim/meta.yaml

Links

biotools: nucleosim, doi: 10.1515/sagmb-2014-0098

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.

package bioconductor-nucleosim

(downloads) docker_bioconductor-nucleosim

Versions

1.16.0-01.14.0-01.12.0-11.10.0-01.8.0-01.6.0-01.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nucleosim

and update with:

conda update bioconductor-nucleosim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nucleosim:<tag>

(see bioconductor-nucleosim/tags for valid values for <tag>)