recipe bioconductor-ocplus

Operating characteristics plus sample size and local fdr for microarray experiments

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/OCplus.html

License:

LGPL

Recipe:

/bioconductor-ocplus/meta.yaml

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

package bioconductor-ocplus

(downloads) docker_bioconductor-ocplus

versions:
1.80.0-0,  1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.62.0-0, 

1.80.0-0,  1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-0,  1.58.0-1,  1.56.0-0

depends bioconductor-multtest:

>=2.62.0,<2.63.0

depends r-base:

>=4.4,<4.5.0a0

depends r-interp:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ocplus

and update with::

   mamba update bioconductor-ocplus

To create a new environment, run:

mamba create --name myenvname bioconductor-ocplus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ocplus:<tag>

(see `bioconductor-ocplus/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ocplus/README.html)